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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ChIP-seq
7
DNase-seq
Assay category
60
DNA binding
7
DNA accessibility
Target of assay
44
transcription factor
16
histone
16
histone modification
10
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
58
November, 2017
4
October, 2019
3
November, 2018
2
June, 2019
Available data
701
bam
637
bigWig
465
fastq
454
bed narrowPeak
371
bigBed narrowPeak
174
tsv
86
tagAlign
67
bed broadPeak
67
bigBed broadPeak
15
bed bed3+
4
hic
4
tar
3
bed bedMethyl
3
bedpe bed3+
3
bigBed bedMethyl
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
67
Homo sapiens
Biosample type
58
cell line
6
primary cell
3
tissue
Organ
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
67
AMP
Genome assembly (visualization)
67
hg19
51
GRCh38
Lab
67
AMP-T2D consortium
Audit category:
13
inconsistent control read length
BIOSAMPLE
ASSAY
67 results
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ChIP-seq
DNase-seq
cell line
HepG2
58
primary cell
endothelial cell of umbilical vein
2
2
hepatic stellate cell
1
hepatocyte
1
tissue
liver
2
right lobe of liver
1
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