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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
FAIRE-seq
1
Hi-C
1
total RNA-seq
Assay category
22
DNA binding
4
DNA accessibility
1
3D chromatin structure
1
Transcription
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
2
control
Date released
315
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
53
November, 2018
40
May, 2022
35
August, 2021
28
October, 2019
10
July, 2019
5
December, 2019
5
January, 2019
4
March, 2020
3
February, 2021
2
June, 2019
1
December, 2018
1
February, 2020
Available data
27
bam
21
bigWig
19
bed narrowPeak
13
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
1
hic
1
tar
1
tsv
Organism
28
Homo sapiens
Biosample type
22
primary cell
6
tissue
Organ
86
brain
69
limb
47
blood vessel
47
vasculature
42
nerve
35
epithelium
30
kidney
26
artery
21
eye
21
vein
18
pancreas
8
heart
7
liver
4
connective tissue
4
gonad
4
ovary
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
28
AMP
Genome assembly (visualization)
23
hg19
19
GRCh38
Lab
28
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
BIOSAMPLE
ASSAY
28 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
Hi-C
total RNA-seq
primary cell
endothelial cell of umbilical vein
17
2
1
1
Liver fetal (hepatocyte)
1
tissue
liver
5
1
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