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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
Assay category
66
DNA binding
Target of assay
338
transcription factor
118
histone modification
117
histone
110
control
82
recombinant protein
66
narrow histone mark
58
RNA binding protein
51
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
27
May, 2020
13
August, 2017
8
October, 2019
7
December, 2017
7
November, 2017
4
August, 2021
Available data
57
bigWig
56
bam
56
bed narrowPeak
40
tagAlign
19
bigBed narrowPeak
19
fastq
6
bed broadPeak
6
bigBed broadPeak
2
bed bed3+
Organism
66
Homo sapiens
Biosample type
44
tissue
9
cell line
8
primary cell
5
in vitro differentiated cells
Organ
117
brain
73
pancreas
60
liver
49
epithelium
33
connective tissue
26
vasculature
25
blood vessel
25
heart
15
kidney
15
limb
13
musculature of body
12
adipose tissue
8
embryo
8
nerve
6
artery
6
vein
4
gonad
4
ovary
3
eye
2
spleen
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
66
AMP
Genome assembly (visualization)
57
hg19
46
GRCh38
Lab
64
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
1
missing controlled_by
Audit category:
6
inconsistent control read length
BIOSAMPLE
ASSAY
66 results
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Clear Filters
ChIP-seq
tissue
liver
42
right lobe of liver
2
cell line
HepG2
9
primary cell
endothelial cell of umbilical vein
6
hepatocyte
2
in vitro differentiated cells
hepatocyte
5
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