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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
3
DNase-seq
2
Hi-C
2
WGBS
2
pCHi-C
1
ATAC-seq
1
FAIRE-seq
Assay category
37
DNA binding
15
DNA accessibility
9
Transcription
2
3D chromatin structure
2
DNA methylation
Target of assay
21
histone
21
histone modification
13
broad histone mark
10
control
8
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
21
October, 2019
19
April, 2020
9
November, 2018
7
December, 2018
7
January, 2019
3
March, 2020
1
October, 2017
Available data
44
bam
31
bigWig
27
bed narrowPeak
26
bigBed narrowPeak
24
fastq
5
bed broadPeak
5
bigBed broadPeak
3
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
2
tsv
1
bedpe bed3+
1
tar
Organism
66
Homo sapiens
Biosample type
45
tissue
22
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
48
AMP
19
LungMap
Genome assembly (visualization)
31
hg19
28
GRCh38
Lab
48
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
audit script error
BIOSAMPLE
ASSAY
67 results
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Clear Filters
ChIP-seq
snATAC-seq
single cell RNA-seq
DNase-seq
Hi-C
WGBS
pCHi-C
ATAC-seq
FAIRE-seq
tissue
spleen
20
1
2
1
1
lung
10
9
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
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