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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
DNase-seq
8
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
FAIRE-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
DNA binding
38
DNA accessibility
9
Transcription
8
3D chromatin structure
6
DNA methylation
Date released
33
June, 2019
10
July, 2019
6
March, 2020
4
August, 2017
4
October, 2019
2
February, 2020
2
May, 2022
1
January, 2018
Available data
44
bigWig
43
bam
36
bed bed3+
36
bed narrowPeak
36
bigBed narrowPeak
35
bed broadPeak
35
bigBed broadPeak
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
4
hic
3
bedpe bed3+
2
fastq
1
tar
1
txt
Organism
62
Homo sapiens
Biosample type
53
tissue
9
primary cell
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
62
AMP
Genome assembly (visualization)
51
hg19
42
GRCh38
Lab
62
AMP-T2D consortium
Audit category:
2
audit script error
1
inconsistent ontology term
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
62 results
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DNase-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
FAIRE-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
1
skeletal muscle tissue
1
4
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
endothelial cell of umbilical vein
2
2
1
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
1
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