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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
ChIP-seq
5
total RNA-seq
4
DNase-seq
1
ATAC-seq
1
FAIRE-seq
1
Hi-C
Assay category
52
DNA binding
6
DNA accessibility
5
Transcription
1
3D chromatin structure
Target of assay
39
histone
39
histone modification
25
broad histone mark
14
narrow histone mark
13
control
Date released
62
October, 2019
1
February, 2020
1
March, 2020
Available data
62
bam
46
bigWig
40
bed narrowPeak
39
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
5
tsv
4
bed bed3+
1
bedpe bed3+
1
hic
1
tar
Organism
64
Homo sapiens
Biosample type
43
tissue
21
primary cell
Organ
942
pancreas
791
liver
684
connective tissue
519
epithelium
491
adipose tissue
353
heart
347
kidney
286
brain
235
vasculature
229
blood vessel
159
bone element
141
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
21
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
64
AMP
Genome assembly (visualization)
47
hg19
43
GRCh38
Lab
64
AMP-T2D consortium
Audit category:
audit script error
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
64 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
FAIRE-seq
Hi-C
tissue
tibial nerve
35
5
2
1
primary cell
endothelial cell of umbilical vein
17
2
1
1
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