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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
ChIP-seq
5
total RNA-seq
4
DNase-seq
2
ATAC-seq
2
Hi-C
1
FAIRE-seq
Assay category
53
DNA binding
7
DNA accessibility
5
Transcription
2
3D chromatin structure
Target of assay
40
histone
40
histone modification
25
broad histone mark
15
narrow histone mark
13
control
Date released
65
October, 2019
1
February, 2020
1
March, 2020
Available data
63
bam
47
bigWig
41
bed narrowPeak
39
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
5
tsv
4
bed bed3+
2
hic
1
bedpe bed3+
1
tagAlign
1
tar
Organism
67
Homo sapiens
Biosample type
45
tissue
22
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
67
AMP
Genome assembly (visualization)
49
hg19
44
GRCh38
Lab
67
AMP-T2D consortium
Audit category:
1
audit script error
BIOSAMPLE
ASSAY
67 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
FAIRE-seq
tissue
tibial nerve
35
5
2
1
islet of Langerhans
1
pituitary gland
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
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