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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
ChIP-seq
4
ATAC-seq
4
total RNA-seq
2
Hi-C
Assay category
7
DNA binding
4
DNA accessibility
4
Transcription
2
3D chromatin structure
Target of assay
5
histone
5
histone modification
4
broad histone mark
2
control
1
narrow histone mark
Date released
8
February, 2023
8
October, 2019
1
March, 2020
Available data
28
bam
bed narrowPeak
15
bigWig
13
bigBed narrowPeak
4
bed bed3
4
bed broadPeak
4
bigBed broadPeak
4
txt
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
17
Homo sapiens
Biosample type
9
primary cell
8
tissue
Organ
732
pancreas
609
connective tissue
478
adipose tissue
373
epithelium
350
liver
202
heart
171
kidney
151
bone element
103
vasculature
101
blood vessel
83
brain
67
artery
36
musculature of body
30
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
17
AMP
Genome assembly (visualization)
8
hg19
Lab
17
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
17 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
primary cell
endothelial cell of umbilical vein
7
2
tissue
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
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