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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
DNase-seq
2
Hi-C
2
WGBS
1
ATAC-seq
1
FAIRE-seq
1
pCHi-C
Assay category
37
DNA binding
2
3D chromatin structure
2
DNA accessibility
2
DNA methylation
Target of assay
21
histone
21
histone modification
13
broad histone mark
10
control
8
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
19
October, 2019
8
November, 2018
7
December, 2018
7
January, 2019
2
March, 2020
1
October, 2017
Available data
41
bam
28
bigWig
24
bed narrowPeak
23
bigBed narrowPeak
23
fastq
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
2
hic
1
bedpe bed3+
1
tar
1
tsv
Organism
44
Homo sapiens
Biosample type
24
tissue
20
primary cell
Organ
938
pancreas
785
liver
675
connective tissue
505
epithelium
489
adipose tissue
323
heart
273
kidney
254
brain
225
vasculature
221
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
44
AMP
Genome assembly (visualization)
28
hg19
25
GRCh38
Lab
44
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
44 results
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ChIP-seq
Hi-C
WGBS
ATAC-seq
FAIRE-seq
pCHi-C
tissue
spleen
20
2
1
1
primary cell
endothelial cell of umbilical vein
17
2
1
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