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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
20
DNase-seq
8
snATAC-seq
2
Hi-C
1
ATAC-seq
1
FAIRE-seq
Assay category
77
DNA binding
30
DNA accessibility
2
3D chromatin structure
Target of assay
51
transcription factor
16
histone
16
histone modification
10
RNA binding protein
10
chromatin remodeller
9
broad histone mark
8
control
7
narrow histone mark
Date released
27
December, 2018
21
October, 2019
18
January, 2019
18
June, 2019
15
November, 2018
8
January, 2021
1
January, 2018
1
March, 2020
Available data
98
bam
88
bigWig
85
bed narrowPeak
85
bigBed narrowPeak
60
fastq
22
bed broadPeak
22
bigBed broadPeak
20
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
109
Homo sapiens
Biosample type
61
cell line
30
primary cell
18
tissue
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
101
AMP
8
T1D
Genome assembly (visualization)
90
hg19
84
GRCh38
Lab
101
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent control
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
109 results
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ChIP-seq
DNase-seq
snATAC-seq
Hi-C
ATAC-seq
FAIRE-seq
cell line
GM12878
60
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
peripheral blood mononuclear cell
8
tissue
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
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