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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ChIP-seq
21
DNase-seq
2
Hi-C
2
WGBS
1
ATAC-seq
1
FAIRE-seq
1
pCHi-C
Assay category
38
DNA binding
23
DNA accessibility
2
3D chromatin structure
2
DNA methylation
Target of assay
22
histone
22
histone modification
13
broad histone mark
10
control
9
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
22
October, 2019
18
June, 2019
9
November, 2018
7
December, 2018
7
January, 2019
2
March, 2020
1
October, 2017
Available data
62
bam
49
bigWig
45
bed narrowPeak
44
bigBed narrowPeak
24
fastq
23
bed broadPeak
23
bigBed broadPeak
21
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bedpe bed3+
1
tar
1
tsv
Organism
66
Homo sapiens
Biosample type
44
tissue
22
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
66
AMP
Genome assembly (visualization)
49
hg19
46
GRCh38
Lab
66
AMP-T2D consortium
Audit category:
1
audit script error
BIOSAMPLE
ASSAY
66 results
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ChIP-seq
DNase-seq
Hi-C
WGBS
ATAC-seq
FAIRE-seq
pCHi-C
tissue
spleen
20
1
2
1
1
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
islet of Langerhans
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
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