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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
DNase-seq
17
ChIP-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
Assay category
21
DNA accessibility
17
DNA binding
2
3D chromatin structure
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
21
October, 2019
18
June, 2019
2
March, 2020
1
May, 2021
Available data
38
bam
33
bigWig
31
bed narrowPeak
31
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
20
bed bed3+
2
hic
1
bedpe bed3+
1
tar
1
tsv
Organism
42
Homo sapiens
Biosample type
22
primary cell
20
tissue
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
41
AMP
1
T1D
Genome assembly (visualization)
35
hg19
30
GRCh38
Lab
41
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
audit script error
BIOSAMPLE
ASSAY
42 results
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DNase-seq
ChIP-seq
Hi-C
pCHi-C
FAIRE-seq
primary cell
endothelial cell of umbilical vein
2
17
2
1
tissue
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
thymus
2
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