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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
28
ChIP-seq
6
DNase-seq
2
Hi-C
2
single cell RNA-seq
1
FAIRE-seq
Assay category
58
Transcription
52
DNA accessibility
28
DNA binding
2
3D chromatin structure
Target of assay
35
histone
35
histone modification
broad histone mark
12
narrow histone mark
11
control
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
24
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
March, 2020
Available data
99
bam
79
bigWig
68
bed narrowPeak
58
tsv
19
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
6
tagAlign
2
hic
1
bedpe bed3+
1
tar
Organism
140
Homo sapiens
Biosample type
66
cell line
59
tissue
15
primary cell
Organ
868
pancreas
749
liver
640
connective tissue
480
epithelium
471
adipose tissue
339
kidney
316
heart
216
brain
191
vasculature
185
blood vessel
159
bone element
127
artery
88
limb
76
musculature of body
69
blood
69
bodily fluid
61
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
140
AMP
Genome assembly (visualization)
121
GRCh38
89
hg19
Lab
140
AMP-T2D consortium
Audit category:
1
audit script error
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
140 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
Hi-C
single cell RNA-seq
FAIRE-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
1
36
5
2
tibial artery
1
1
9
2
pulmonary artery
2
primary cell
endothelial cell of umbilical vein
8
2
2
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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