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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ChIP-seq
14
total RNA-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
1
GRO-seq
Assay category
30
DNA binding
14
Transcription
3
DNA accessibility
2
3D chromatin structure
Target of assay
27
histone
27
histone modification
14
narrow histone mark
13
broad histone mark
control
3
transcription factor
Date released
19
October, 2019
10
February, 2018
9
December, 2017
8
August, 2021
2
May, 2021
1
January, 2018
1
March, 2020
Available data
47
bam
44
bigWig
27
bed narrowPeak
20
fastq
14
tsv
13
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
hic
1
bedpe bed3+
1
tar
Organism
50
Homo sapiens
Biosample type
22
in vitro differentiated cells
20
primary cell
8
cell line
Organ
893
pancreas
683
liver
649
connective tissue
494
epithelium
467
adipose tissue
373
heart
342
kidney
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
50
AMP
Genome assembly (visualization)
45
hg19
40
GRCh38
1
hg18
Lab
50
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
target.investigated_as!
control
BIOSAMPLE
ASSAY
50 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
FAIRE-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
13
4
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
primary cell
endothelial cell of umbilical vein
15
2
2
1
cell line
H1-hESC
8
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