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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
6
DNase-seq
5
total RNA-seq
4
single cell RNA-seq
2
ATAC-seq
2
pCHi-C
Assay category
12
DNA binding
9
Transcription
8
DNA accessibility
Target of assay
8
histone
8
histone modification
4
broad histone mark
4
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
17
June, 2019
July, 2019
6
November, 2020
3
February, 2021
2
April, 2018
2
July, 2018
1
May, 2021
Available data
30
bam
25
bigWig
17
bed narrowPeak
15
bigBed narrowPeak
9
tsv
7
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
3
fastq
1
bed bed3
Organism
31
Homo sapiens
Biosample type
536
tissue
97
in vitro differentiated cells
31
primary cell
1
stem cell
Organ
393
epithelium
346
pancreas
32
vasculature
31
connective tissue
29
kidney
27
blood vessel
22
vein
14
brain
12
liver
11
musculature of body
8
blood
8
bodily fluid
8
heart
4
eye
1
bone element
1
bone marrow
Project
30
AMP
1
T1D
Genome assembly (visualization)
26
GRCh38
26
hg19
Lab
30
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
12
inconsistent ontology term
month_released!
July, 2019
BIOSAMPLE
ASSAY
31 results
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ChIP-seq
DNase-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
pCHi-C
primary cell
osteoblast
1
5
2
1
cardiac fibroblast
5
3
mesenchymal stem cell
7
pancreatic stellate cell
4
adult endothelial progenitor cell
1
brain pericyte
1
hepatic stellate cell
1
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