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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
total RNA-seq
34
ATAC-seq
18
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
154
DNA binding
52
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
176
May, 2021
18
February, 2023
18
May, 2022
16
January, 2021
Available data
132
bed narrowPeak
122
bigWig
102
bam
84
tagAlign
18
fastq
Organism
228
Homo sapiens
Biosample type
141
primary cell
42
in vitro differentiated cells
40
tissue
5
cell line
Organ
39
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
135
T1D
93
AMP
Genome assembly (visualization)
140
hg19
84
GRCh38
Lab
2376
AMP-T2D consortium
232
Klaus Kaestner, Upenn
228
Kyle Gaulton, UCSD
93
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
18
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_title!
total RNA-seq
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
228 results
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Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
1
CD8-positive, alpha-beta T cell
33
1
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
+ See 11 more…
in vitro differentiated cells
embryonic stem cell
37
5
tissue
islet of Langerhans
29
6
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
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