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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
18
small RNA-seq
15
RRBS
11
WGBS
6
ATAC-seq
4
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
26
DNA methylation
21
Transcription
8
DNA accessibility
4
3D chromatin structure
Target of assay
3
control
Date released
406
November, 2017
315
August, 2017
244
August, 2021
219
October, 2019
217
May, 2021
186
June, 2019
174
May, 2022
164
February, 2021
151
May, 2020
113
May, 2019
111
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
59
July, 2019
49
April, 2018
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
September, 2020
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
18
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
4
August, 2018
3
June, 2018
3
October, 2022
1
August, 2022
1
March, 2023
Available data
40
bigWig
37
bam
22
bed bedMethyl
22
bigBed bedMethyl
21
tsv
7
bed narrowPeak
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
59
Homo sapiens
Biosample type
41
tissue
18
primary cell
Organ
15
heart
14
brain
8
epithelium
8
musculature of body
7
vasculature
6
blood vessel
6
kidney
6
liver
5
connective tissue
limb
4
pancreas
3
adipose tissue
1
artery
1
eye
1
pericardium
Project
59
AMP
Genome assembly (visualization)
47
hg19
34
GRCh38
Lab
59
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
total RNA-seq
organ_slims!
limb
BIOSAMPLE
ASSAY
59 results
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Clear Filters
small RNA-seq
RRBS
WGBS
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
1
4
2
right lobe of liver
2
1
aorta
2
body of pancreas
2
frontal cortex
1
1
+ See 22 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
+ See 12 more…
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