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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
69
DNase-seq
64
single cell RNA-seq
total RNA-seq
37
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
FAIRE-seq
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
151
DNA accessibility
65
Transcription
37
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
9
control
8
transcription factor
7
recombinant protein
1
RNA binding protein
Date released
81
August, 2021
68
June, 2019
47
September, 2023
23
April, 2019
15
October, 2019
14
May, 2023
8
February, 2021
3
December, 2019
3
July, 2019
2
March, 2020
Available data
161
bed narrowPeak
108
bam
98
bigWig
88
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
13
tsv
13
txt
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
264
Homo sapiens
Biosample type
249
tissue
primary cell
15
cell line
Organ
593
liver
312
heart
276
pancreas
264
kidney
248
brain
180
connective tissue
140
blood vessel
140
vasculature
115
limb
96
bone element
91
adipose tissue
85
artery
79
epithelium
77
musculature of body
61
blood
61
bodily fluid
38
nerve
37
eye
25
spleen
23
embryo
19
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
217
AMP
47
KPMP
Genome assembly (visualization)
172
GRCh38
99
hg19
Lab
122
AMP-T2D consortium
93
Katalin Susztak, Upenn
47
KPMP
2
Bing Ren, UCSD
Audit category:
12
inconsistent ontology term
7
audit script error
assay_title!
total RNA-seq
biosample_type!
primary cell
BIOSAMPLE
ASSAY
264 results
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ATAC-seq
DNase-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
STARR-seq
pCHi-C
FAIRE-seq
Hi-C
RRBS
small RNA-seq
tissue
kidney
75
13
64
27
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
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cell line
RCC 7860 HIF1a re-expression
4
RCC 7860 vector
3
1
RCC 7860 HIF2a over-expression
3
HEK293T
2
RCC 7860 VHL
1
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