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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
snATAC-seq
6
total RNA-seq
3
Hi-C
2
ChIP-seq
1
pCHi-C
Assay category
27
DNA accessibility
6
Transcription
3
3D chromatin structure
2
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
27
February, 2021
4
May, 2020
3
March, 2020
3
October, 2022
2
May, 2021
Available data
27
fastq
8
bam
8
bigWig
6
tsv
3
bedpe bed3+
3
cool
3
hic
2
bed narrowPeak
Organism
39
Homo sapiens
Biosample type
35
primary cell
4
cell line
Organ
7
epithelium
7
pancreas
Project
AMP
30
HPAP
9
T1D
Genome assembly (visualization)
11
hg19
8
GRCh38
Lab
30
Klaus Kaestner, Upenn
5
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
30
audit script error
9
inconsistent ontology term
award.project!
AMP
BIOSAMPLE
ASSAY
39 results
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snATAC-seq
total RNA-seq
Hi-C
ChIP-seq
pCHi-C
primary cell
Langerhans cell
27
naive B cel
2
1
central memory CD8-positive, alpha-beta T cell
2
pancreatic acinar cell
1
pancreatic alpha cell
1
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cell line
EndoC_BH1
2
2
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