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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
total RNA-seq
19
ATAC-seq
17
ChIP-seq
6
MeRIP-seq
5
single cell RNA-seq
2
Capture-C
1
Hi-C
Assay category
39
Transcription
19
DNA accessibility
17
DNA binding
1
3D chromatin structure
Target of assay
14
histone
14
histone modification
8
narrow histone mark
6
broad histone mark
5
control
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
21
May, 2021
16
November, 2019
6
November, 2020
5
July, 2018
5
March, 2020
2
August, 2021
2
October, 2019
1
February, 2020
Available data
56
bam
55
bigWig
40
tsv
16
bed narrowPeak
5
fastq
1
bedpe bed3+
1
hic
Organism
84
Homo sapiens
Biosample type
76
cell line
5
primary cell
3
tissue
Organ
91
epithelium
84
bone element
81
pancreas
23
kidney
19
connective tissue
9
musculature of body
6
embryo
6
heart
3
brain
1
adipose tissue
1
limb
1
liver
1
stomach
1
urinary bladder
1
vasculature
Project
80
AMP
4
T1D
Genome assembly (visualization)
57
hg19
54
GRCh38
Lab
78
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
84
inconsistent ontology term
4
audit script error
BIOSAMPLE
ASSAY
84 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
single cell RNA-seq
Capture-C
Hi-C
cell line
EndoC_BH1
33
19
15
6
2
1
primary cell
co-expressing pancreatic endocrine cell
2
unclassified pancreatic endocrine cell
2
pancreatic acinar cell
1
tissue
brodmann area 43
1
cerebellum (Hemisphere)
1
insular gyrus
1
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