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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
Assay category
42
DNA binding
Target of assay
23
transcription factor
19
histone
19
histone modification
12
chromatin remodeller
10
narrow histone mark
9
broad histone mark
4
RNA binding protein
1
recombinant protein
Date released
16
August, 2017
10
December, 2017
8
November, 2017
5
November, 2018
2
February, 2018
1
October, 2018
Available data
55
bam
55
bigWig
55
fastq
53
bed narrowPeak
31
bigBed narrowPeak
13
bed broadPeak
bigBed broadPeak
11
tagAlign
10
bed bed3+
Organism
42
Homo sapiens
Biosample type
16
in vitro differentiated cells
13
cell line
6
tissue
5
primary cell
2
stem cell
Organ
14
liver
9
pancreas
6
connective tissue
4
epithelium
2
embryo
Project
42
AMP
Genome assembly (visualization)
42
hg19
40
GRCh38
Lab
42
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
42
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
files.file_type!
bigBed broadPeak
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
42 results
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ChIP-seq
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
cell line
HepG2
13
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
stem cell
hESC
2
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