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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
222
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
5
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
222
DNA binding
89
Transcription
15
DNA methylation
10
DNA accessibility
Target of assay
156
histone modification
155
histone
85
broad histone mark
70
narrow histone mark
41
control
25
transcription factor
4
RNA binding protein
1
chromatin remodeller
Date released
689
February, 2021
406
November, 2017
341
May, 2020
336
August, 2017
306
October, 2019
276
August, 2021
267
May, 2021
218
June, 2019
200
May, 2022
188
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
18
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
4
January, 2018
3
August, 2018
3
June, 2018
3
October, 2022
1
August, 2022
1
March, 2023
Available data
226
fastq
221
bam
218
bigWig
93
bed narrowPeak
89
tsv
64
tagAlign
35
bigBed narrowPeak
34
bed broadPeak
26
bed bed3+
14
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
336
Homo sapiens
Biosample type
277
tissue
in vitro differentiated cells
59
primary cell
Organ
181
pancreas
57
adipose tissue
57
connective tissue
54
liver
29
epithelium
26
musculature of body
Project
336
AMP
Genome assembly (visualization)
221
hg19
194
GRCh38
Lab
336
AMP-T2D consortium
Audit category:
34
missing controlled_by
Audit category:
10
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
336 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
42
89
1
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
white adipose tissue
12
+ See 4 more…
primary cell
skeletal muscle myoblast
15
1
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
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