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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
46
ATAC-seq
35
ChIP-seq
2
single cell RNA-seq
Assay category
58
Transcription
46
DNA accessibility
35
DNA binding
Target of assay
21
histone
21
histone modification
14
broad histone mark
9
control
7
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
26
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
Available data
103
bam
86
bigWig
75
bed narrowPeak
58
tsv
25
bigBed narrowPeak
7
tagAlign
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
139
Homo sapiens
Biosample type
71
tissue
66
cell line
2
primary cell
Organ
909
pancreas
778
liver
656
connective tissue
502
epithelium
484
adipose tissue
363
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
vein
19
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
139
AMP
Genome assembly (visualization)
125
GRCh38
90
hg19
Lab
139
AMP-T2D consortium
files.file_type!
bed bed3+
organ_slims!
vein
BIOSAMPLE
ASSAY
139 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
tissue
coronary artery
1
36
5
tibial artery
1
1
23
pulmonary artery
2
islet of Langerhans
1
pituitary gland
1
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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