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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
36
DNase-seq
ATAC-seq
7
total RNA-seq
4
Hi-C
Assay category
66
DNA binding
36
DNA accessibility
7
Transcription
4
3D chromatin structure
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
67
October, 2019
32
June, 2019
7
May, 2019
4
July, 2019
3
February, 2020
Available data
106
bam
89
bigWig
84
bed narrowPeak
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
bed bedMethyl
1
bigBed bedMethyl
Organism
113
Homo sapiens
Biosample type
113
tissue
Organ
780
pancreas
765
liver
655
connective tissue
482
adipose tissue
414
epithelium
338
heart
280
brain
275
kidney
188
vasculature
183
blood vessel
147
bone element
113
limb
96
artery
91
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
32
eye
22
spleen
22
vein
19
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
113
AMP
Genome assembly (visualization)
88
hg19
87
GRCh38
Lab
113
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bed bedMethyl
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
113 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
tissue
tibial nerve
35
2
5
tibial artery
23
2
1
muscle of leg
7
13
muscle of arm
17
gastrocnemius medialis
1
4
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