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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
552
ChIP-seq
23
ATAC-seq
6
DNase-seq
4
Hi-C
4
WGBS
3
pCHi-C
2
STARR-seq
1
whole genome sequencing assay
Assay category
552
DNA binding
Transcription
29
DNA accessibility
4
3D chromatin structure
4
DNA methylation
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
53
August, 2017
52
November, 2018
51
May, 2020
26
August, 2021
20
May, 2022
6
October, 2019
2
February, 2021
2
July, 2019
2
June, 2019
2
March, 2020
1
December, 2018
Available data
519
bam
460
bigWig
460
fastq
441
bed narrowPeak
358
bigBed narrowPeak
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
2
tsv
1
bed bed3
1
hdf5
1
vcf
Organism
595
Homo sapiens
Biosample type
386
cell line
186
tissue
15
in vitro differentiated cells
8
primary cell
Organ
595
liver
453
pancreas
316
epithelium
260
brain
225
kidney
219
heart
199
connective tissue
167
vasculature
162
blood vessel
114
limb
97
bone element
87
adipose tissue
83
artery
83
musculature of body
69
blood
69
bodily fluid
41
eye
38
nerve
23
embryo
23
spleen
22
vein
18
ureter
12
skeleton
10
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
595
AMP
Genome assembly (visualization)
461
hg19
368
GRCh38
Lab
553
AMP-T2D consortium
22
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bigBed bedMethyl
assay_slims!
Transcription
BIOSAMPLE
ASSAY
595 results
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ChIP-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
pCHi-C
STARR-seq
whole genome sequencing assay
cell line
HepG2
378
1
2
2
2
1
tissue
liver
145
20
2
1
3
1
right lobe of liver
10
1
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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