Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ChIP-seq
189
total RNA-seq
22
ATAC-seq
4
Hi-C
4
WGBS
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
200
DNA binding
193
Transcription
23
DNA accessibility
4
3D chromatin structure
4
DNA methylation
1
DNA sequencing
Target of assay
108
control
68
histone modification
67
histone
46
narrow histone mark
24
transcription factor
21
broad histone mark
3
RNA binding protein
1
recombinant protein
Date released
194
May, 2020
66
November, 2017
47
August, 2017
40
May, 2022
35
August, 2021
13
December, 2017
9
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
1
December, 2018
1
February, 2020
1
November, 2018
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
430
Homo sapiens
Biosample type
311
tissue
107
cell line
11
primary cell
1
in vitro differentiated cells
Organ
847
pancreas
652
connective tissue
478
adipose tissue
441
epithelium
430
liver
291
heart
246
kidney
159
bone element
157
brain
151
vasculature
150
blood vessel
116
artery
54
eye
45
musculature of body
37
embryo
37
limb
19
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
10
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
430
AMP
Genome assembly (visualization)
269
hg19
204
GRCh38
Lab
359
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
bigBed bedMethyl
bigBed narrowPeak
BIOSAMPLE
ASSAY
430 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
small RNA-seq
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
107
167
20
1
3
1
1
1
right lobe of liver
3
3
1
2
1
cell line
HepG2
85
14
1
2
2
2
1
primary cell
hepatocyte
4
5
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
Download