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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
124
ChIP-seq
7
WGBS
6
RRBS
3
single cell RNA-seq
2
RNA microarray
1
DNase-seq
Assay category
124
DNA binding
13
DNA methylation
3
Transcription
1
DNA accessibility
Target of assay
76
histone
76
histone modification
48
broad histone mark
48
control
28
narrow histone mark
Date released
271
August, 2021
201
February, 2023
180
May, 2022
164
February, 2021
138
August, 2017
107
October, 2019
96
May, 2021
81
May, 2020
72
November, 2017
56
September, 2020
47
September, 2023
44
March, 2020
30
November, 2019
29
October, 2018
25
February, 2020
23
July, 2019
23
May, 2019
22
December, 2017
18
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
11
November, 2020
9
October, 2017
8
February, 2018
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
4
January, 2019
4
July, 2018
3
October, 2022
1
August, 2018
1
August, 2022
1
March, 2023
1
September, 2018
Available data
280
bam
280
fastq
bigWig
136
bed narrowPeak
98
tsv
78
tagAlign
36
bigBed narrowPeak
35
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
143
Homo sapiens
Biosample type
108
tissue
22
in vitro differentiated cells
13
primary cell
Organ
60
connective tissue
40
adipose tissue
36
liver
28
pancreas
13
epithelium
13
musculature of body
3
kidney
Project
143
AMP
Genome assembly (visualization)
6
hg19
2
GRCh38
Lab
143
AMP-T2D consortium
Audit category:
4
audit script error
2
inconsistent ontology term
files.file_type!
bigWig
BIOSAMPLE
ASSAY
143 results
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Clear Filters
ChIP-seq
WGBS
RRBS
single cell RNA-seq
RNA microarray
DNase-seq
tissue
subcutaneous abdominal adipose tissue
35
3
liver
31
3
1
islet of Langerhans
15
skeletal muscle tissue
9
4
adipose tissue
1
1
+ See 5 more…
in vitro differentiated cells
adipocyte
20
cardiomyocytes (cardiac muscle cell)
2
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
skeletal muscle myoblast
1
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