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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
31
total RNA-seq
30
ATAC-seq
6
pCHi-C
3
RRBS
Assay category
49
DNA binding
31
Transcription
30
DNA accessibility
3
DNA methylation
Target of assay
26
control
23
histone
23
histone modification
13
narrow histone mark
10
broad histone mark
Date released
32
February, 2023
31
October, 2019
25
November, 2017
13
February, 2020
9
October, 2017
3
July, 2019
3
May, 2019
2
March, 2020
1
June, 2019
Available data
250
bam
236
bed narrowPeak
bigWig
133
bigBed narrowPeak
118
tagAlign
51
bed broadPeak
42
bigBed broadPeak
39
bed bed3+
31
tsv
21
fastq
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
119
Homo sapiens
Biosample type
116
tissue
3
primary cell
Organ
321
pancreas
223
kidney
222
epithelium
169
heart
169
liver
113
connective tissue
101
bone element
81
vasculature
80
blood vessel
65
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
19
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
119
AMP
Genome assembly (visualization)
33
hg19
3
GRCh38
Lab
119
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bigWig
BIOSAMPLE
ASSAY
119 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
RRBS
tissue
islet of Langerhans
2
14
2
4
retina
3
15
pigmented layer of retina
2
12
brain
9
1
1
cingulate gyrus
8
+ See 24 more…
primary cell
retinal pigment epithelial cell
1
1
choroid plexus epithelial cell
1
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