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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
ChIP-seq
9
single cell RNA-seq
9
snATAC-seq
4
WGBS
3
pCHi-C
3
total RNA-seq
2
ATAC-seq
Assay category
54
DNA binding
12
Transcription
11
DNA accessibility
4
DNA methylation
Target of assay
30
histone
30
histone modification
24
control
20
broad histone mark
10
narrow histone mark
Date released
40
August, 2017
18
April, 2020
18
October, 2018
2
February, 2020
2
March, 2020
1
August, 2018
1
February, 2023
1
May, 2023
1
November, 2019
Available data
442
bam
bigWig
402
tsv
44
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
84
Homo sapiens
Biosample type
83
tissue
1
in vitro differentiated cells
Organ
321
pancreas
223
kidney
222
epithelium
169
heart
169
liver
113
connective tissue
101
bone element
81
vasculature
80
blood vessel
65
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
19
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
66
AMP
18
LungMap
Genome assembly (visualization)
3
hg19
2
GRCh38
Lab
66
AMP-T2D consortium
18
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
files.file_type!
bigWig
BIOSAMPLE
ASSAY
84 results
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ChIP-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
total RNA-seq
ATAC-seq
tissue
subcutaneous abdominal adipose tissue
35
3
lung
9
9
1
subcutaneous adipose tissue
10
1
omental fat pad
8
1
adipose tissue
1
1
1
1
1
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in vitro differentiated cells
white fat cell
1
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