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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
DNase-seq
6
ChIP-seq
2
ATAC-seq
Assay category
9
DNA accessibility
6
DNA binding
Target of assay
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
6
August, 2017
4
June, 2019
2
November, 2018
1
March, 2019
1
October, 2017
1
October, 2019
Available data
676
bam
601
bigWig
409
tsv
395
fastq
204
bed narrowPeak
85
bigBed narrowPeak
29
bed bed3+
15
bed broadPeak
12
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
4
bedpe bed3+
4
hic
1
bedpe
1
hdf5
Organism
15
Homo sapiens
Biosample type
14
tissue
1
cell line
Organ
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
18
ureter
17
vasculature
15
pancreas
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
15
AMP
Genome assembly (visualization)
12
hg19
8
GRCh38
Lab
13
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
BIOSAMPLE
ASSAY
15 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
islet of Langerhans
6
2
body of pancreas
4
pancreas
2
cell line
Panc1
1
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