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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
DNase-seq
107
ChIP-seq
2
ATAC-seq
Assay category
199
DNA accessibility
107
DNA binding
Target of assay
58
histone
58
histone modification
49
transcription factor
32
broad histone mark
26
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
181
June, 2019
70
November, 2017
33
August, 2017
9
October, 2019
8
November, 2018
4
October, 2017
1
March, 2019
Available data
2792
bam
2553
bigWig
1696
bed narrowPeak
1250
fastq
1122
tsv
1008
bigBed narrowPeak
369
tagAlign
306
bed broadPeak
276
bigBed broadPeak
246
bed bed3+
160
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
23
hic
22
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
4
tar
3
bed bedgraph
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
306
Homo sapiens
Biosample type
204
tissue
59
cell line
43
primary cell
Organ
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
18
ureter
17
vasculature
15
pancreas
13
blood vessel
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
306
AMP
Genome assembly (visualization)
283
hg19
267
GRCh38
Lab
304
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
1
inconsistent assembly
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
306 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 43 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
+ See 14 more…
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