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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
DNase-seq
102
ChIP-seq
2
ATAC-seq
Assay category
192
DNA accessibility
102
DNA binding
Target of assay
55
histone
55
histone modification
47
transcription factor
30
broad histone mark
25
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
173
June, 2019
66
November, 2017
35
August, 2017
9
November, 2018
5
October, 2019
4
October, 2017
1
March, 2019
1
November, 2020
Available data
3068
bam
2822
bigWig
1620
bed narrowPeak
1444
tsv
1094
fastq
960
bigBed narrowPeak
384
tagAlign
294
bed broadPeak
263
bigBed broadPeak
252
bed bed3+
160
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
18
bedpe bed3+
17
hic
12
bed bed3
8
csv
7
bed bedgraph
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
294
Homo sapiens
Biosample type
207
tissue
59
cell line
27
primary cell
1
in vitro differentiated cells
Organ
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
epithelium
18
ureter
17
vasculature
15
pancreas
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
294
AMP
Genome assembly (visualization)
276
hg19
256
GRCh38
Lab
292
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
1
inconsistent assembly
organ_slims!
epithelium
BIOSAMPLE
ASSAY
294 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 45 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
astrocyte of the hippocampus
1
brain pericyte
1
+ See 5 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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