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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
32
DNase-seq
13
total RNA-seq
ATAC-seq
2
pCHi-C
Assay category
218
DNA binding
32
DNA accessibility
13
Transcription
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
85
October, 2019
30
June, 2019
28
May, 2019
July, 2019
15
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
Available data
229
bam
205
bigWig
202
bed narrowPeak
126
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
20
fastq
15
tsv
1
tagAlign bed3+
Organism
265
Homo sapiens
Biosample type
251
tissue
14
primary cell
Organ
780
pancreas
758
liver
640
connective tissue
472
adipose tissue
407
epithelium
285
heart
268
kidney
265
brain
180
vasculature
175
blood vessel
147
bone element
109
limb
94
artery
85
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
32
eye
24
spleen
22
vein
19
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
265
AMP
Genome assembly (visualization)
204
GRCh38
146
hg19
Lab
265
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
July, 2019
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
265 results
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ChIP-seq
DNase-seq
total RNA-seq
pCHi-C
tissue
brain
20
14
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
angular gyrus
15
+ See 74 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
astrocyte of the hippocampus
1
brain pericyte
1
See all biosamples
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