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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
49
total RNA-seq
23
ChIP-seq
8
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
whole genome sequencing assay
Assay category
82
DNA accessibility
57
Transcription
23
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
318
November, 2017
200
May, 2022
199
June, 2019
188
February, 2023
175
August, 2021
156
February, 2021
125
May, 2020
123
August, 2017
102
October, 2019
88
November, 2018
86
May, 2021
63
December, 2017
59
September, 2020
47
September, 2023
44
October, 2018
43
July, 2019
35
December, 2018
31
November, 2019
28
May, 2019
20
April, 2019
18
April, 2020
18
January, 2019
16
January, 2021
16
March, 2020
15
May, 2023
15
September, 2018
12
November, 2020
11
October, 2017
11
September, 2017
8
February, 2018
8
January, 2018
7
August, 2020
5
March, 2019
5
May, 2024
4
July, 2018
3
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
1
March, 2023
Available data
tsv
87
bed narrowPeak
64
xls
57
txt
33
bam
28
bigWig
8
tagAlign
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
175
Homo sapiens
Biosample type
129
tissue
24
cell line
21
in vitro differentiated cells
1
primary cell
Organ
130
kidney
20
liver
4
connective tissue
3
epithelium
3
pancreas
Project
175
AMP
Genome assembly (visualization)
74
GRCh38
27
hg19
Lab
128
Katalin Susztak, Upenn
23
Bing Ren, UCSD
20
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
files.file_type!
tsv
target.investigated_as!
histone
BIOSAMPLE
ASSAY
175 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
whole genome sequencing assay
tissue
kidney
64
49
8
6
1
islet of Langerhans
1
cell line
HepG2
15
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
1
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