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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
total RNA-seq
7
ChIP-seq
5
STARR-seq
2
Capture-C
1
Hi-C
1
whole genome sequencing assay
Assay category
17
Transcription
7
DNA binding
1
3D chromatin structure
1
DNA sequencing
Target of assay
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
91
February, 2021
74
November, 2017
33
August, 2021
23
October, 2019
21
May, 2021
15
November, 2019
11
March, 2020
9
January, 2019
6
November, 2020
5
February, 2023
4
November, 2018
3
December, 2018
1
January, 2018
1
May, 2020
0
September, 2023
Available data
17
tsv
11
bigWig
8
bam
3
bed narrowPeak
1
bedpe bed3+
1
hic
1
vcf
Organism
33
Homo sapiens
Biosample type
275
tissue
42
in vitro differentiated cells
33
cell line
4
primary cell
Organ
20
liver
8
embryo
2
epithelium
2
kidney
2
pancreas
Project
33
AMP
Genome assembly (visualization)
12
hg19
8
GRCh38
Lab
23
Bing Ren, UCSD
10
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
33 results
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total RNA-seq
ChIP-seq
STARR-seq
Capture-C
Hi-C
whole genome sequencing assay
cell line
HepG2
9
7
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
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