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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
total RNA-seq
5
ATAC-seq
3
ChIP-seq
Assay category
98
Transcription
5
DNA accessibility
3
DNA binding
Target of assay
histone
114
histone modification
64
broad histone mark
50
narrow histone mark
3
control
Date released
61
May, 2021
45
May, 2020
Available data
120
bam
106
bigWig
96
tsv
24
fastq
18
bed narrowPeak
6
txt
2
bed bed3+
Organism
106
Homo sapiens
Biosample type
101
primary cell
5
in vitro differentiated cells
Project
96
T1D
10
AMP
Genome assembly (visualization)
106
hg19
96
GRCh38
Lab
2143
AMP-T2D consortium
106
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
11
Bing Ren, UCSD
10
Klaus Kaestner, Upenn
5
Patrick T. Ellinor, Broad
5
Struan F.A. Grant, CHOP
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
target.investigated_as!
histone
BIOSAMPLE
ASSAY
106 results
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total RNA-seq
ATAC-seq
ChIP-seq
primary cell
monocyte
53
CD8-positive, alpha-beta T cell
4
3
B cell
2
T follicular helper cell
2
T-helper 1 cell
2
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in vitro differentiated cells
embryonic stem cell
5
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