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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
9
total RNA-seq
2
STARR-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
16
DNA binding
9
Transcription
1
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
histone
6
histone modification
5
control
4
narrow histone mark
2
broad histone mark
1
RNA binding protein
Date released
300
November, 2017
167
May, 2020
53
November, 2018
46
December, 2017
40
May, 2022
29
August, 2021
22
August, 2017
10
July, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
2
October, 2019
1
December, 2018
1
February, 2020
Available data
11
bed narrowPeak
11
bigWig
9
tsv
1
bam
1
bedpe bed3+
1
hic
1
tagAlign
1
vcf
Organism
29
Homo sapiens
Biosample type
28
cell line
1
primary cell
Organ
130
kidney
92
heart
29
liver
8
embryo
6
blood vessel
6
vasculature
4
connective tissue
4
pancreas
3
epithelium
2
artery
Project
29
AMP
Genome assembly (visualization)
12
hg19
Lab
28
Bing Ren, UCSD
1
AMP-T2D consortium
target.investigated_as!
histone
BIOSAMPLE
ASSAY
29 results
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ChIP-seq
total RNA-seq
STARR-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
15
9
2
1
1
primary cell
hepatocyte
1
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