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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
806
ChIP-seq
260
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
86
RNA microarray
27
WGBS
27
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
806
DNA binding
Target of assay
622
histone modification
621
histone
322
narrow histone mark
299
broad histone mark
184
control
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
195
October, 2019
146
August, 2017
111
May, 2019
82
November, 2017
74
April, 2019
59
October, 2018
50
May, 2020
35
May, 2024
17
December, 2017
15
October, 2017
7
January, 2019
6
September, 2017
4
December, 2018
3
November, 2018
2
March, 2020
Available data
626
bam
516
bigWig
514
bed narrowPeak
306
bigBed narrowPeak
231
tagAlign
134
fastq
29
bed broadPeak
15
bed bed3+
1
tagAlign bed3+
Organism
806
Homo sapiens
Biosample type
806
tissue
269
primary cell
149
in vitro differentiated cells
123
cell line
3
stem cell
Organ
209
brain
116
liver
111
heart
93
pancreas
70
blood vessel
70
vasculature
66
limb
57
connective tissue
56
adipose tissue
35
nerve
29
musculature of body
27
artery
26
kidney
14
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
804
AMP
2
T1D
Genome assembly (visualization)
491
GRCh38
435
hg19
Lab
771
AMP-T2D consortium
35
Patrick T. Ellinor, Broad
Audit category:
2
inconsistent ontology term
Audit category:
8
missing controlled_by
Audit category:
6
inconsistent control read length
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
806 results
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Clear Filters
ChIP-seq
tissue
liver
108
islet of Langerhans
64
subcutaneous abdominal adipose tissue
36
left cardiac atrium
35
tibial nerve
35
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