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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
ChIP-seq
Assay category
72
DNA binding
Target of assay
420
transcription factor
389
histone
389
histone modification
198
broad histone mark
190
narrow histone mark
156
control
89
recombinant protein
86
RNA binding protein
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
31
November, 2017
19
November, 2018
5
August, 2017
5
May, 2021
4
June, 2019
2
December, 2018
2
January, 2019
1
August, 2021
1
December, 2017
1
May, 2019
1
November, 2019
Available data
66
bam
65
bed narrowPeak
65
bigWig
60
fastq
59
bigBed narrowPeak
7
bed broadPeak
7
bigBed broadPeak
1
tar
Organism
72
Homo sapiens
Biosample type
53
cell line
tissue
10
in vitro differentiated cells
9
primary cell
Organ
48
liver
7
epithelium
5
blood
5
bodily fluid
5
connective tissue
3
brain
2
kidney
2
vasculature
1
blood vessel
1
eye
1
heart
1
pancreas
Project
72
AMP
Genome assembly (visualization)
64
hg19
60
GRCh38
Lab
66
AMP-T2D consortium
5
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
1
inconsistent control read length
biosample_type!
tissue
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
72 results
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ChIP-seq
cell line
HepG2
47
GM12878
5
EndoC_BH1
1
in vitro differentiated cells
embryonic stem cell
5
adipocyte
4
hepatocyte
1
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
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