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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
289
total RNA-seq
76
ChIP-seq
62
ATAC-seq
11
snATAC-seq
7
DNase-seq
4
Hi-C
4
MeRIP-seq
4
WGBS
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
pCHi-C
Assay category
291
Transcription
82
DNA accessibility
76
DNA binding
6
DNA methylation
4
3D chromatin structure
Target of assay
73
histone
73
histone modification
broad histone mark
32
narrow histone mark
29
control
17
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
125
August, 2017
120
July, 2018
39
November, 2019
37
May, 2021
32
October, 2018
24
May, 2022
18
February, 2023
9
March, 2020
8
January, 2021
7
November, 2018
6
April, 2018
6
July, 2019
6
September, 2017
5
March, 2019
5
October, 2017
4
June, 2019
4
November, 2020
3
October, 2019
2
August, 2021
2
May, 2019
1
August, 2022
1
February, 2020
Available data
396
bam
336
bigWig
275
tsv
188
fastq
87
bed narrowPeak
35
bigBed narrowPeak
21
bed bed3+
12
bed broadPeak
8
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
bigBed broadPeak
6
txt
3
bedpe bed3+
3
hic
1
bedpe
Organism
461
Homo sapiens
Biosample type
464
tissue
319
primary cell
82
cell line
3
in vitro differentiated cells
Organ
527
connective tissue
468
adipose tissue
464
pancreas
336
liver
289
kidney
236
heart
195
brain
158
bone element
97
blood vessel
97
vasculature
88
limb
66
musculature of body
59
artery
56
eye
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
434
AMP
30
T1D
Genome assembly (visualization)
376
hg19
353
GRCh38
Lab
401
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
9
missing controlled_by
Audit category:
2
inconsistent control read length
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
464 results
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total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
DNase-seq
Hi-C
MeRIP-seq
WGBS
FAIRE-seq
RRBS
small RNA-seq
pCHi-C
tissue
islet of Langerhans
284
36
58
7
1
3
4
1
1
body of pancreas
3
24
4
4
2
2
pancreas
2
8
4
2
1
2
1
1
1
endocrine pancreas
8
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