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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
374
ChIP-seq
104
total RNA-seq
3
ATAC-seq
3
Hi-C
2
DNase-seq
1
WGBS
Assay category
374
DNA binding
104
Transcription
5
DNA accessibility
3
3D chromatin structure
1
DNA methylation
Target of assay
356
transcription factor
88
recombinant protein
63
RNA binding protein
37
histone
histone modification
30
chromatin remodeller
19
narrow histone mark
18
broad histone mark
13
control
2
other context
2
other post-translational modification
Date released
253
November, 2017
83
February, 2021
57
November, 2018
27
December, 2018
20
August, 2021
19
January, 2019
14
October, 2019
6
March, 2020
4
May, 2021
3
November, 2019
1
January, 2018
Available data
547
bam
485
bigWig
411
fastq
369
bed narrowPeak
335
bigBed narrowPeak
119
tsv
45
bed broadPeak
45
bigBed broadPeak
9
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
487
Homo sapiens
Biosample type
1256
tissue
487
cell line
389
primary cell
185
in vitro differentiated cells
1
stem cell
Organ
315
liver
56
artery
56
blood vessel
56
heart
56
vasculature
54
blood
54
bodily fluid
39
epithelium
39
pancreas
12
kidney
8
embryo
Project
485
AMP
2
T1D
Genome assembly (visualization)
482
hg19
422
GRCh38
Lab
475
AMP-T2D consortium
12
Bing Ren, UCSD
Audit category:
47
inconsistent ontology term
1
inconsistent control
Audit category:
11
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
487 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
DNase-seq
WGBS
cell line
HepG2
308
5
1
1
smooth muscle cell of the coronary artery
4
52
GM12878
53
1
EndoC_BH1
1
33
2
1
H1-hESC
8
RCC 7860 HIF1a re-expression
3
1
RCC 7860 HIF2a over-expression
2
1
RCC 7860 vector
2
1
Panc1
1
1
early embryonic cell
2
glomerular visceral epithelial cell
1
1
iPSC derived cell line
1
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