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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
388
ChIP-seq
total RNA-seq
13
ATAC-seq
3
Hi-C
2
DNase-seq
1
pCHi-C
Assay category
388
DNA binding
15
DNA accessibility
3
3D chromatin structure
Target of assay
352
transcription factor
85
recombinant protein
62
RNA binding protein
37
histone
37
histone modification
30
chromatin remodeller
narrow histone mark
18
broad histone mark
13
control
2
other context
2
other post-translational modification
Date released
259
November, 2017
54
November, 2018
27
December, 2018
15
February, 2021
14
January, 2019
13
August, 2021
13
October, 2019
9
November, 2019
2
March, 2020
1
January, 2018
Available data
394
bigWig
388
bam
382
bed narrowPeak
354
fastq
341
bigBed narrowPeak
53
bed broadPeak
53
bigBed broadPeak
12
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
hdf5
1
tsv
Organism
407
Homo sapiens
Biosample type
614
tissue
407
cell line
364
primary cell
130
in vitro differentiated cells
2
stem cell
Organ
316
liver
54
blood
54
bodily fluid
16
pancreas
12
artery
12
blood vessel
12
epithelium
12
heart
12
vasculature
8
kidney
Project
407
AMP
Genome assembly (visualization)
407
hg19
344
GRCh38
Lab
394
AMP-T2D consortium
13
Bing Ren, UCSD
Audit category:
18
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
11
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
target.investigated_as!
narrow histone mark
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
407 results
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ChIP-seq
ATAC-seq
Hi-C
DNase-seq
pCHi-C
cell line
HepG2
313
1
1
1
GM12878
53
1
smooth muscle cell of the coronary artery
4
8
EndoC_BH1
7
3
1
Panc1
3
1
1
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
glomerular visceral epithelial cell
1
iPSC derived cell line
1
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