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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
359
ChIP-seq
Assay category
359
DNA binding
Target of assay
361
transcription factor
89
recombinant protein
83
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
other context
2
other post-translational modification
Date released
239
November, 2017
57
November, 2018
25
December, 2018
14
January, 2019
11
August, 2021
7
October, 2019
5
February, 2021
1
November, 2019
Available data
354
bigWig
350
bed narrowPeak
347
bam
335
fastq
326
bigBed narrowPeak
43
bed broadPeak
43
bigBed broadPeak
5
tagAlign
3
tar
Organism
359
Homo sapiens
Biosample type
359
cell line
91
tissue
49
in vitro differentiated cells
10
primary cell
Organ
295
liver
51
blood
51
bodily fluid
7
kidney
4
artery
4
blood vessel
4
heart
4
vasculature
1
epithelium
1
pancreas
Project
359
AMP
Genome assembly (visualization)
350
hg19
307
GRCh38
Lab
348
AMP-T2D consortium
11
Bing Ren, UCSD
Audit category:
8
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
other context
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
359 results
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Clear Filters
ChIP-seq
cell line
HepG2
295
GM12878
51
smooth muscle cell of the coronary artery
4
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
EndoC_BH1
1
iPSC derived cell line
1
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