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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
119
ChIP-seq
Assay category
127
Transcription
119
DNA binding
43
DNA accessibility
4
3D chromatin structure
Target of assay
77
histone
77
histone modification
40
narrow histone mark
37
transcription factor
36
broad histone mark
6
RNA binding protein
5
control
3
chromatin remodeller
Date released
48
August, 2017
38
December, 2017
16
February, 2018
12
August, 2021
5
May, 2021
Available data
119
bam
114
bigWig
109
bed narrowPeak
102
fastq
19
bed bed3+
17
tagAlign
14
bigBed narrowPeak
Organism
119
Homo sapiens
Biosample type
526
tissue
405
cell line
247
primary cell
119
in vitro differentiated cells
3
stem cell
Organ
48
connective tissue
18
epithelium
15
embryo
14
liver
2
pancreas
Project
119
AMP
Genome assembly (visualization)
120
GRCh38
119
hg19
Lab
119
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
17
inconsistent control read length
target.investigated_as!
other context
BIOSAMPLE
ASSAY
119 results
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ChIP-seq
in vitro differentiated cells
adipocyte
48
hepatocyte
14
pancreatic endoderm
13
neural progenitor cell
12
definitive endodermal cell
7
primitive gut cell
7
Posterior foregut
5
cardiomyocytes
3
Hepatic endoderm
2
embryonic stem cell
2
endocrine cell
2
pancreatic PP cell
2
posterior foregut
2
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