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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
total RNA-seq
100
single cell RNA-seq
12
ATAC-seq
6
WGBS
2
small RNA-seq
Assay category
150
Transcription
Date released
52
May, 2021
45
May, 2020
26
September, 2018
13
July, 2019
5
December, 2019
4
November, 2020
2
October, 2018
2
October, 2019
1
February, 2021
Available data
152
bigWig
150
bam
150
tsv
120
fastq
2
bed bed3+
Organism
150
Homo sapiens
Biosample type
925
tissue
150
primary cell
127
in vitro differentiated cells
113
cell line
Organ
40
epithelium
28
pancreas
10
connective tissue
6
kidney
5
liver
4
heart
2
artery
2
blood vessel
2
vasculature
1
adipose tissue
1
musculature of body
1
pericardium
Project
96
T1D
54
AMP
Genome assembly (visualization)
150
GRCh38
150
hg19
Lab
96
Kyle Gaulton, UCSD
54
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
150 results
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total RNA-seq
primary cell
monocyte
53
pancreatic alpha cell
10
pancreatic beta cell
10
hepatocyte
5
osteoblast
5
pancreatic acinar cell
4
pancreatic ductal cell
4
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
central memory CD8-positive, alpha-beta T cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
gamma-delta T cell
2
mature natural killer cell
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
naive B cel
2
naive regulatory T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
regulatory T cell
2
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
embryonic stem cell
1
endothelial cell of coronary artery
1
epithelial cell of proximal tubule
1
glomerular endothelial cell
1
immature natural killer cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
mesangial cell
1
mesenchymal stem cell of adipose
1
myeloid dendritic cell
1
natural killer cell
1
pericardium fibroblast
1
plasma cell
1
plasmacytoid dendritic cell
1
renal cortical epithelial cell
1
skeletal muscle myoblast
1
skeletal muscle satellite cell
1
smooth muscle cell of the coronary artery
1
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