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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
64
ATAC-seq
59
total RNA-seq
13
single cell RNA-seq
1
snATAC-seq
Assay category
72
Transcription
65
DNA accessibility
Date released
121
August, 2021
89
February, 2021
7
May, 2022
4
February, 2023
Available data
1907
bam
1772
bigWig
1076
tsv
984
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
221
Homo sapiens
Biosample type
221
tissue
3
in vitro differentiated cells
1
cell line
Organ
126
kidney
88
bone element
6
pancreas
4
skeleton
1
musculature of body
Project
221
AMP
Genome assembly (visualization)
64
GRCh38
1
hg19
Lab
121
Katalin Susztak, Upenn
94
AMP-T2D consortium
6
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
6
audit script error
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
221 results
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RNA microarray
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
tissue
kidney
64
49
13
bone element
84
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
ischium
1
pubis
1
skeletal muscle tissue
1
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