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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
260
ChIP-seq
104
total RNA-seq
13
ATAC-seq
3
Hi-C
2
DNase-seq
1
pCHi-C
Assay category
260
DNA binding
104
Transcription
15
DNA accessibility
3
3D chromatin structure
Target of assay
352
transcription factor
recombinant protein
RNA binding protein
37
histone
37
histone modification
30
chromatin remodeller
19
narrow histone mark
18
broad histone mark
13
control
2
other context
2
other post-translational modification
Date released
170
November, 2017
93
February, 2021
25
December, 2018
22
August, 2021
20
November, 2018
14
January, 2019
13
November, 2019
13
October, 2019
7
March, 2020
5
May, 2021
1
January, 2018
Available data
370
bigWig
363
bam
253
bed narrowPeak
229
fastq
213
bigBed narrowPeak
105
tsv
55
bed broadPeak
55
bigBed broadPeak
17
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
2
tar
1
bed bed3
1
hdf5
Organism
383
Homo sapiens
Biosample type
1733
tissue
618
primary cell
383
cell line
291
in vitro differentiated cells
3
stem cell
Organ
201
liver
64
artery
64
blood vessel
64
heart
64
vasculature
57
pancreas
51
epithelium
45
blood
45
bodily fluid
8
embryo
5
kidney
Project
379
AMP
4
T1D
Genome assembly (visualization)
383
hg19
318
GRCh38
Lab
369
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
52
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
10
missing controlled_by
Audit category:
19
inconsistent control read length
5
inconsistent control run_type
1
inconsistent assembly
target.investigated_as!
recombinant protein
RNA binding protein
BIOSAMPLE
ASSAY
383 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
DNase-seq
pCHi-C
cell line
HepG2
193
5
1
1
1
smooth muscle cell of the coronary artery
4
52
8
EndoC_BH1
12
33
3
1
GM12878
44
1
H1-hESC
8
Panc1
6
1
1
early embryonic cell
2
glomerular visceral epithelial cell
1
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
iPSC derived cell line
1
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