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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
total RNA-seq
153
ChIP-seq
21
ATAC-seq
4
DNase-seq
4
WGBS
3
small RNA-seq
1
Hi-C
1
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
174
Transcription
153
DNA binding
25
DNA accessibility
5
DNA methylation
1
3D chromatin structure
Target of assay
70
histone modification
69
histone
46
control
44
narrow histone mark
39
transcription factor
25
broad histone mark
2
RNA binding protein
chromatin remodeller
Date released
193
May, 2020
54
August, 2017
46
December, 2017
40
May, 2022
8
July, 2019
7
November, 2018
6
October, 2019
3
March, 2020
1
February, 2020
1
February, 2021
Available data
286
bam
263
bigWig
154
tsv
111
bed narrowPeak
81
fastq
70
tagAlign
47
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
359
Homo sapiens
Biosample type
359
tissue
299
cell line
14
in vitro differentiated cells
14
primary cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
359
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
359
AMP
Genome assembly (visualization)
266
hg19
236
GRCh38
Lab
319
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
25
inconsistent control
Audit category:
1
inconsistent control read length
target.investigated_as!
recombinant protein
chromatin remodeller
BIOSAMPLE
ASSAY
359 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
167
143
20
2
3
1
1
1
1
1
right lobe of liver
3
10
1
2
1
2
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