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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
2
Hi-C
1
ATAC-seq
1
total RNA-seq
Assay category
14
DNA binding
2
3D chromatin structure
1
DNA accessibility
1
Transcription
Target of assay
transcription factor
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
3
RNA binding protein
2
chromatin remodeller
2
control
Date released
91
February, 2021
74
November, 2017
33
August, 2021
23
October, 2019
21
May, 2021
15
November, 2019
11
March, 2020
9
January, 2019
6
February, 2023
6
November, 2020
4
November, 2018
3
December, 2018
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
16
bam
13
bed narrowPeak
13
bigWig
3
fastq
2
bigBed narrowPeak
1
bedpe bed3+
1
hic
1
tsv
Organism
18
Homo sapiens
Biosample type
44
tissue
18
cell line
5
in vitro differentiated cells
Organ
15
epithelium
15
pancreas
2
blood
2
bodily fluid
1
liver
Project
18
AMP
Genome assembly (visualization)
15
hg19
14
GRCh38
Lab
18
AMP-T2D consortium
Audit category:
15
inconsistent ontology term
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
18 results
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ChIP-seq
Hi-C
ATAC-seq
total RNA-seq
cell line
EndoC_BH1
12
1
1
1
GM12878
2
HepG2
1
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