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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
49
DNA binding
10
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
64
transcription factor
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
670
February, 2021
403
August, 2017
369
November, 2017
318
August, 2021
314
October, 2019
296
May, 2020
241
May, 2021
214
June, 2019
168
July, 2018
115
May, 2019
106
February, 2023
90
December, 2017
90
July, 2019
76
April, 2019
73
September, 2018
67
November, 2018
66
May, 2022
65
October, 2018
60
November, 2019
57
March, 2020
49
April, 2018
39
February, 2018
35
May, 2024
33
December, 2018
25
February, 2020
24
January, 2019
23
October, 2017
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
5
March, 2019
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
67
fastq
66
bam
59
bigWig
52
bed narrowPeak
52
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
67
Homo sapiens
Biosample type
40
cell line
26
tissue
1
primary cell
Organ
34
liver
13
blood
13
bodily fluid
9
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
67
AMP
Genome assembly (visualization)
58
GRCh38
50
hg19
Lab
67
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
4
inconsistent control read length
3
inconsistent control run_type
target.investigated_as!
RNA binding protein
assay_title!
small RNA-seq
BIOSAMPLE
ASSAY
67 results
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ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
26
1
GM12878
13
tissue
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
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primary cell
pancreatic cell
1
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